PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g29080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 231aa    MW: 26166.5 Da    PI: 5.8376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g29080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-052348123
                EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                + Cp   Cgk++ + + Lk+Hi++ H
  CA03g29080 23 HICPypACGKRYAHEYKLKNHISStH 48
                6799999***************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-9353No hitNo description
Gene3DG3DSA:3.30.160.602.8E-10949IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3672353IPR007087Zinc finger, C2H2
PROSITE patternPS0002802548IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-67997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQAFSLDFNL RSHMKTHSQE NYHICPYPAC GKRYAHEYKL KNHISSTHQK NTPVAQKYTP  60
PVEKPVKTPK STPATYGSSS SERPYSCPYE GCDKSYIHEY KPNLLLRNMH PGHLPDDNAK  120
NAQSAADNEM GEGSDQDTYA ARRGNGRIQK QSRPKPSLKQ PPLKVARKGS SSAASQANLS  180
ISKKPWLLKE ENYNEEDSEE TEEERERDDV GEGWRYGEND DDDEETEEDD *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564400.11e-134PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-70Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLM1AIE21e-112M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234591e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.32e-62C2H2 family protein